oakx_spacy package

Submodules

oakx_spacy.cli module

Command line interface for oakx-spacy.

oakx_spacy.spacy_implementation module

Spacy Implementation.

class oakx_spacy.spacy_implementation.SpacyImplementation(resource=None, strict=False, multilingual=None, preferred_language=<factory>, autosave=<factory>, exclude_owl_top_and_bottom=<factory>, ontology_metamodel_mapper=None, _converter=None, **_kwargs)

Bases: TextAnnotatorInterface, OboGraphInterface

Spacy Implementation.

annotate_file(text_file, configuration)

Annotate text from a file.

Parameters

• text – Text to be annotated.

• configuration (TextAnnotationConfiguration) – TextAnnotationConfiguration , defaults to None

Yield

Annotated result

Return type

Iterable[TextAnnotation]

annotate_text(text, configuration)

Annotate text from a file.

Parameters

• text (str) – Text to be annotated.

• configuration (TextAnnotationConfiguration) – TextAnnotationConfiguration , defaults to None

Yield

Annotated result

Return type

Iterable[TextAnnotation]

write_output(output_dict, fieldnames, info)

Generate dictionary representation of the output which is exported as TSV.

Parameters

• output_dict (dict) – Dictionary to be exported.

• fieldnames (list[str]) – column names.

• info (dict) – Dictionary containing extra information.

Module contents

oakx_spacy package.